Chipbase 2.0
WebSep 1, 2024 · ChIPBase has identified ∼151 187 000 regulatory relationships between ∼171 600 genes and ∼3000 regulators by analyzing ∼55 000 ChIP-seq datasets, which … WebJun 4, 2024 · Original ArticleH3K27 demethylase KDM6B aggravates ischemic brain injury through demethylation of IRF4 and Notch2-dependent SOX9 activation Lisha Chang,1 Zhaowang An,2 Jiang Zhang,1 Fuling Zhou,1 Dali Wang,1 Jian Liu,1 and Yunhe Zhang2 1The 2nd Department of Neurology, North China University of Science and …
Chipbase 2.0
Did you know?
WebSep 7, 2024 · ChIPBase constructed ‘Regulator’ module to predict hundreds of TFs and histone modifications that were involved in or affected transcription of ncRNAs and PCGs. ChIPBase built a web-based tool, Co-Expression, to recognize the co-expression patterns between DNA-binding proteins and various types of genes by integrating the gene … WebAn ensemble model of binary node interactions (valid for an abstract average cell) was derived from publicly available data. Transcription factor binding data was derived from ChIPBase 2.0 (Zhou et al., 2024), and …
WebJan 8, 2024 · In addition, a series of databases have been developed to explore ncRNA expression patterns, regulatory networks and biological functions, such as RNAcentral , LNCipedia , LncRNAdb , ChIPBase , NONCODE , LncRNADisease , starBase and circBase . However, these databases focus on either specific ncRNA families or specific features … WebThe protein module on the Chipbase v.2.0 website displayed binding sites in both the upstream and downstream regions of IRF4 and Notch2 (Figure 4B). The co-expression …
http://starbase.sysu.edu.cn/starbase2/index.php WebNational Center for Biotechnology Information
WebFor comments, suggestions on the ChIPBase database, please use the E-mail: [email protected] Please cite ChIPBase paper, Nucleic Acids Res. 2013; 41:D177-87. . The Number of Visitors: 119761
WebJan 4, 2024 · System overview of ChIPBase v2.0 core framework. All results generated by ChIPBase v2.0 are deposited in MySQL relational databases and displayed in the visual browser and web page. ray\\u0027s weather banner elk north carolinaWebChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data Ke-Ren Zhou 0 Shun Liu 0 Wen-Ju Sun 0 Ling-Ling Zheng 0 Hui Zhou 0 Jian-Hua Yang 0 Liang-Hu Qu 0 0 Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat … ray\\u0027s weather beech mountain nchttp://deepbase.sysu.edu.cn/chipbase/expression.php ray\\u0027s weather banner elkWebmiRBase is the central online repository for microRNA (miRNA) nomenclature, sequence data, annotation and target prediction. The current release (10.0) contains 5071 miRNA loci from 58 species, expressing 5922 distinct mature miRNA sequences: a growth of over 2000 sequences in the past 2 years. miRBase provides a range of data to facilitate ... ray\u0027s weather beech mtn ncWebThe current PlantPAN release (version 3.0) contains 17,230 TFs and 4,703 matrices of TF binding sites among 78 plant species. For optimal use of this database, we recommend to use Google Chrome or Firefox browser and … ray\u0027s weather beech mtnWebFor comments, suggestions on the ChIPBase database, please use the E-mail: [email protected] Please cite ChIPBase paper, Nucleic Acids Res. 2013; 41:D177 … ray\\u0027s weather beech mtn ncWebMar 29, 2024 · Decoded the regulatory mechanisms mediated by transcriptional regulators and epitranscriptomic codes and developed integrative analysis platforms (ChIPBase and dreamBase) for facilitating study of ... ray\u0027s weather beech mt nc